Ok I’ve got this fixed now.
I cleaned up the root folder and put all my files into a subfolder to make backups easier. But then I had to redirect my urls to the new subfolder using htaccess. Now everything is neat and tidy.
Just as I was ready to try another backup, I thought I would update Updraftplus and I’m really glad I did, because your team just updated the “Add directories” option!! I can now browse my server for the exact file/folder that I need. Thank you!
You guys made my day. Thanks for the quick help.